Inference phylogenetically placing Phytophthora cyperi using mitochondrial cox1 sequences

Relevant files used in the phylogenetic inference featured in Bourret et al. (2024) (under review): First detection of the obligate biotroph Phytophthora cyperi causing a disease on yellow nutsedge in the United States, and establishment of molecular barcoding sequences for the species (PhytoFrontiers). The files consist of a list of sequence accessions, the mitochondrial cox1 alignment, and output files from IQ-TREE 2 (Partition and model-finding + maximum likelihood phylogenetic inference), PartitionFinder2 (Partition and model-finding for Bayesian analysis) and MrBayes 3.2.6 (Bayesian phylogenetic inference)