Differential expression analysis of antisense transcripts. Reads were mapped to a human (hg38) + HSV genome and read counts for each gene was calculated using STAR.

ComBat was used to correct for batch effect and DESeq2 was used to normalize counts and calculate differential expression for reads that map to the antisense strand. Genes with an adjusted p value < 0.05 and a fold change > 2 are reported. See S1 Table legend for explanation of gene list labels. No genes met the p value and fold change cutoffs for inf_DOWN, uninf_UP, or uninf_DOWN so these lists are not reported.
(XLSX)