CASTpFold

The CASTpFold database enhances the original CASTp by incorporating AlphaFold2-predicted protein structures, expanding its repository to include over 183 million protein structures. It offers detailed analysis of protein topographies, such as surface pockets, cavities, and channels, and integrates functional annotations with Gene Ontology and Enzyme Commission numbers.

CASTpFold数据库对原始CASTp数据库进行了升级优化，集成了AlphaFold2预测的蛋白质结构，将其存储库扩充至包含超过1.83亿个蛋白质结构。该数据库可开展蛋白质拓扑结构的精细化分析，涵盖表面口袋、空腔与通道等维度，并整合了基因本体论（Gene Ontology）与酶学委员会（Enzyme Commission）编号相关的功能注释信息。

搜集汇总

背景与挑战

背景概述

CASTpFold是一个免费开放的蛋白质结构表面拓扑计算图谱数据库，支持PyMOL/Chimera等可视化工具，并要求用户在使用时引用相关论文。