Additional file 1 of Expression- and splicing-based multi-tissue transcriptome-wide association studies identified multiple genes for breast cancer by estrogen-receptor status

Additional file 1: Table S1. List of genes identified in previous transcriptome-wide association studies of estrogen receptor-(ER) positive or negative breast cancer. Table S2. All genes identified in this joint TWAS study for ER + and ER- breast cancer. Table S3. List of known index SNPs of ER + breast cancer GWAS and ER + genes identified in our study, by genomic locus. Table S4. List of known index SNPs of ER- breast cancer GWAS and ER- genes identified in our study. Table S5. Nearby GWAS index SNPs of TERT and TOX3. Table S6. Nearby GWAS index SNPs of CHEK2 and TP53 and their correlations with SNPs included in expression prediction models. Table S7. Candidate causal genes for ER + breast cancer identified by FOCUS. Table S8. Candidate causal genes for ER- breast cancer identified by FOCUS. Table S9. Significant gene sets in the enrichment analysis of ER + genes using FUMA. Table S10. Significant gene sets in the enrichment analysis of ER- genes using FUMA.