遇见数据集

Datasets related to the VirAnimalOne project

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Zenodo2021-04-23 更新2026-05-25 收录
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<strong>VirAnimalOne</strong> is a project focused on large scale mining of publicly deposited genomic and transcriptomic datasets available from ENA/SRA and derived from pets, livestock and wild animal species: to identify unexpected coronavirus sequences; to mine the host animal genomes for potential variants that might confer resistance or susceptibility to SARS-CoV-2 and other coronaviruses known to infect both humans and animals; to phylogenetically and structurally evaluate host receptor conformations and infer potential animal susceptibility to coronavirus infections, with particular attention for SARS-Cov-2. Here, we report the pipeline, preliminary datasets and results produced in this project and related to the VirAnimalOne Technical Report: <strong>Technical_Report_VirAnimalOne_Pipeline. </strong>It reports and describes the bioinformatic pipeline used for the mining of the omics datasets. <strong>Tables S1-S6</strong>. Genome datasets used for mining activities. <strong>Table S7</strong>. List of host genes involved in coronavirus infection and used for mining polymorphisms in the host genome using the retrieved datasets. <strong>Table S8-S13</strong>. List of annotated variants in the selected host genes involved in coronavirus infection. <strong>Tables S14-S10</strong>. Viral sequences identified in the next-generation sequencing datasets generated from the selected domestic species. <strong>Warning</strong>: Please, check for updated versions as data can present some inaccuracies.

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Zenodo
创建时间:
2021-04-22
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