Comparison of microarrays and low-density mate-pair sequencing for detection of constitutional and aphidicolin-induced genome structural variation

To compare available whole-genome approaches for scoring human genomic structural variation, data from both 1M feature single-nucleotide polymorphism (SNP) arrays and low-density mate-pair sequencing were mined to detect both constitutional CNVs in a single individual as well as de novo CNVs induced by the replication stressor aphidicolin.