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Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia

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Zenodo2021-02-03 更新2026-05-25 收录
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<strong>Code and Data Availability of the manuscript: Mapping tree diversity in the tropical forest region of Chocó-Colombia</strong> In revision at Environmental Research letters. J. Camilo Fagua<sup>1</sup>*, Patrick Jantz<sup>1</sup>, Patrick Burns<sup>1</sup>, Richard Massey<sup>1</sup><sub>,</sub> Jeiner Y. Buitrago<sup>2</sup>, Sassan Saatchi<sup>3</sup> and Scott J. Goetz<sup>1 </sup> <sup>1</sup><em> Global Earth Observation &amp; Dynamics of Ecosystems Lab (GEODE), School of Informatics, Computing, and Cyber Systems (SICCS), Northern Arizona University, Flagstaff, Arizona, US<em>.</em></em> <em><sup>2</sup></em><em> Department of Agronomy, Faculty of Agricultural Sciences, Universidad Nacional de Colombia. Bogota (Colombia).</em> <em><sup>3</sup></em><em> Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA</em> *Corresponding author: J. Camilo Fagua, School of Informatics, Computing, and Cyber Systems (Building #90) 1295 S. Knoles Dr. Flagstaff, AZ 86011. Email: Camilo.Fagua@nau.edu <strong>1) The files “0_Forest_Structure_maps_in_tif” and “1_Forest_Structure_maps_in_tif” contain seven maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif</strong> (a) Canopy height (CH) map: CHOCO_MAP_CH (b) 50th percentile of heights (z_50) map: CHOCO_MAP_z_50 (c) Vertical Canopy Heterogeneity (VCH) map: CHOCO_MAP_VCH (d) Standard deviation of normalized heights (z_SD) map: CHOCO_MAP_z_SD (e) Horizontal standard deviation of canopy height (CH_ SD): CHOCO_MAP_CH_SD (f) Horizontal heterogeneity of canopy height (CH_H): CHOCO_MAP_CH_H (g) Rumple Index of canopy height (R_INDEX): CHOCO_MAP_R_INDEX <strong>2) The file “2_Diversity_maps_in_tif” contains five maps of forest structural metrics for the Chocó region of Colombia in the raster format .tif</strong> (a) Species richness (Richness): MAPS_MEAN_Richness (b) Shannon’s entropy index (ENS-Shannon): MAPS_MEAN_ENS_shannon (c) Simpson’s concentration index (ENS-Simpson): MAPS_MEAN_ENS_Simpson (d) Shannon diversity index (H): MAPS_MEAN_Shannon (e) Simpson diversity index (D): MAPS_MEAN_Simpson <strong>3) The file “3_LiDAR_processing” contents data and R codes to estimate forest structural metrics from ALS-LiDAR data (.las) in an Amazon moist forest.</strong>

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2021-02-03
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