These resulting predicted transcriptome and proteome were used by combining the original annotation and improved by using de novo transcriptome assembly. The improvements are i) some previously fr
- clean.fasta: Assembly cleaned from cross-contamination of other species multiplexed (Corallochytrium limacisporum Hawaii, Abeoforma whisleri and Parvularia atlantis [Nuclearia sp ATCC 50694]) after
- Assembly in-home BGI to obtain Unigene (contigs)- ORF prediction using TransDecoder (Trinity plugin) and PfamScan to obtain coding sequences (CDS files) from transcripts (mRNA)- Protein translations
Nutomonas longa 's transcriptome (formerly known as Planomonas carolina) Reads are deposited in NCBI: https://www.ncbi.nlm.nih.gov/sra/SRX736986 - Assembly in-home BG
