HMM code and input files

Contains data and code to run an HMM optimisation for Hermes insertion data.Contains:The predictors of insertion density:predictors.2016-10-06.tar.gzincludes:insertion motif similarity score (IMSS)nucleosome density scoreshidden Markov Model R codetransposon-hmm-7-cross-validation.Rsample config filelog.III.5A.tr-even.config.r#the code is run like so:cat transposon-hmm-7-cross-validation.R | \R --slave --args config.r input.RdaWe also include:sample input files: all-log.and-predictors.2016-10-06.txt.RdaSample output files:log.all-model5A.hmmresult.table.RdaHermes-containing read mapping scores:mapping.scores.txt.gz