Reads-per-UMI tables across single-cell RNA sequencing protocols

Data analyzed in Lause, Ziegenhain et al. (2023). Code to obtain these tables from public data sources is available on github. Each row in the table is a UMI-tag detected in a certain cell (column RG) attached to a molecule from a specific gene (column GE) with a certain barcode (column UB). Column N gives the number of times the UMI was detected for that gene and cell. Data sources and protocols are given with the respective file names below. <strong>Johnsson2022_Smartseq3_PE.hd1.txt.gz</strong>: Mouse fibroblasts profiled with <strong>Smart-seq3</strong> paired-end; accession E-MTAB-10148, sample plate2,<br> Paper<br> <br> <strong>Hagemann-Jensen2020_Smartseq3_SE.hd1.txt.gz: </strong>Mouse fibroblasts profiled with <strong>Smart-seq3</strong> single-end; accession E-MTAB-8735, sample Smartseq3.Fibroblasts.smFISH<br> Paper<br> <br> <strong>Hagemann-Jensen2022_Smartseq3xpress.hd1.txt.gz: </strong>HEK293 cells profiled with <strong>Smart-seq3Xpress</strong>; accession E-MTAB-11467.<br> Paper<br> <br> <strong>Ziegenhain2017.hd1.txt.gz: </strong>Mouse embryonic stem cells profiled by <strong>CEL-seq2, Drop-seq, MARS-seq, </strong>and<strong> SCRB-seq</strong>; GEO accession GSE75790<br> Paper