Text S1 - Statistical Inference for Multi-Pathogen Systems

In the supplementary information, we provide the following: 1. The complete deterministic skeleton of the model in Table S1. 2. A brief description of the inference technology used in the paper. 3. Details on the construction of log-likelihood profiles and surfaces. 4. An example examining the effect of changing epidemiology, with Fig. S1. 5. Supplementary information on under-reporting, with Fig. S2, and Fig. S3. 6. An example where initial conditions are estimated along with the interaction, with Fig. S4.
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