Comparison in terms of AUC, F1, precision, recall between the results obtained from different classifiers on the relative abundances matrix and on the presence absence boolean matrix (only at species level).
MetaFunc is a computational pipeline that can take input reads and pass it through a pipeline that will then analyse host genes from the reads on one side, and microbiome taxonomies and gene ontology
Final taxonomy information for OTUs in final dataset. Species IDs were obtained using BLAST and percent similarity to the closest known relative is included in the file.
The read counts and relative abundances for Bacillus anthracis identified by various tools after the whole genome sequencing of two samples from the New York City subway system. (XLSX 13 kb)