Single cell whole genome sequencing from Funnell, O'Flanagan, Williams et al

This repository provides the processed data necessary to reproduce the results from: "Single cell genomic variation induced by mutational processes in cancer<strong> </strong><em>Funnell, O’Flanagan, Williams et al</em>" This includes the following: Single cell whole genome sequencing Allele specific copy number profiles SNV counts per cell Structural variant counts per cell QC metrics clone assignments phylogenetic trees computed with sitka benchmarking results vs other methods bulk whole genome sequencing copy number profiles SNVs 10X single cell RNA sequencing count matrices seurat Rdata objects analysis tables downstream processed results used to generate figures oxford nanopore phasing results For further information please feel free to get in touch with Marc Williams (william1 [at] mskcc.org)