Additional file 10 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation
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Additional file 10: Table 9. This table contains the results of gene set enrichment analysis (GSEA) for fixed/cryo versus cryo mouse lung samples, by cell population. The analysis was performed using the fgsea package with multiple gene sets from MSigDB. Gene sets containing within 10-300 genes were included and the obtained results were considered significant if the FDR adjusted p-value was <0.05 and if >5 genes overlapped with the gene set, representing >15% of the gene set (see Methods).
提供机构:
Batlle, Eduard; Butler, Lisa M.; Jensen, Kirk B.; Nieto, Juan C.; Ryan, Natalie K.; Gut, Ivo; Caratù, Ginevra; Gudiño, Victoria; Bernardes, Joana P.; Roth, Sara; Martelotto, Luciano G.; Jiménez-Gracia, Laura; Rosenstiel, Philip; Tran, Florian; Hernando-Momblona, Xavier; Plummer, Jasmine; Parish, Ian A.; van den Berge, Maarten; Kole, Tessa; van der Velde, Petra L.; Salas, Azucena; Sievers, Laura Katharina; Melón-Ardanaz, Elisa; Nawijn, Martijn C.; Heyn, Holger; Marchese, Domenica; Schreiber, Stefan; Wise, Kellie
创建时间:
2024-08-15



