SNP datasets used in the paper “Floristic classifications and bioregionalizations are not predictors of intra-specific evolutionary patterns”
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https://researchdata.edu.au/snp-datasets-used-evolutionary-patterns/3367869
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资源简介:
The SNP dataset for each species investigated in this study is present. These datasets are saved as R data objects in list formats with meta-data for samples and post filtering DArTseq SNPs. Sample filtering included removing samples which we suspected to be mis-identified taxa, hybrids and those with >50% missing data, after which any samples from populations with less than 5 suitable samples remaining were also removed. SNP filtering included removing loci with reproducibility values below 0.96, missingness of >20%, followed by subsampling to one SNP per locus to remove any linkage effects. Datasets can be read into R, where they are formatted as list objects.
提供机构:
The University of Queensland



