Supplemental Material for Wang et al., 2020

Table S1 Illumina sequencing reads used for genome size estimation and the correction of the genome assembly；Table S2 Size distributions of the PacBio subreads；Table S3 Statistical details of the PacBio subreads；Table S4 The initial C. mollissima assembly, as generated by different tools；Table S5 Statistical details of the Hi-C library data；Table S6 Details of the alignment of the clean Hi-C data to the initial assembly；Table S7 Statistical details of all types of Hi-C sequencing pairs；Table S8 Evaluation using BUSCO；Table S9 Alignment of the Illumina reads to the C. mollissima genome assembly；Table S10 Functional annotation of the predicted protein-coding genes；Table S11 Castanea mollissima gene prediction；Table S12 Statistical details of the identified genes；Table S13 Statistical details of the identified repeat sequences；Fig S1. Distribution of subread lengths；Figure S2 Nineteen-k-mer estimation of genome size；Fig S3 Differences in the genes predicted by the Ab initio, homolog, and RNA-sequencing methods；

表S1：用于基因组大小估计和基因组组装校正的Illumina测序读取；表S2：PacBio亚读取的大小分布；表S3：PacBio亚读取的统计细节；表S4：由不同工具生成的C. mollissima初始组装；表S5：Hi-C文库数据的统计细节；表S6：清洁Hi-C数据与初始组装的对齐细节；表S7：所有类型Hi-C测序对的统计细节；表S8：使用BUSCO进行评估；表S9：Illumina读取与C. mollissima基因组组装的对齐；表S10：预测蛋白编码基因的功能注释；表S11：Castanea mollissima基因预测；表S12：鉴定基因的统计细节；表S13：鉴定重复序列的统计细节；图S1：亚读取长度的分布；图S2：基于十九-核苷酸估计的基因组大小；图S3：Ab initio、同源和RNA测序方法预测基因的差异。