High-throughput sequencing has fundamentally changed how molecular phylogenetic datasets are assembled, and phylogenomic datasets commonly contain 50-100-fold more loci than those generated using trad
The vcf file with variable and invariable sites and multiple sequence alignments (for whole-genome and 16S rRNA phylogeny, and extracted from the vcf file) used for analyses.
Supplemental Files Supplemental File 1. Species sampled in six dynamic plots for this study. Supplemental File 2. Alignment file of the three standard DNA barcode markers (rbcL, matK, and trnH
Used to calculate phylogenetic diversity for each site. List of species names found at the 29 restored prairie sites in this study (taxonomy according to Voss & Reznicek 2012) and corresponding specie
Using the full-length zinc protease gene (znpA, 1,227 bp) from type strains and clinical isolates of Fusobacterium nucleatum , Fusobacterium hwasookii (FH), and Fusobacterium periodont
