Data produced in the phylogenetic analysis of Secale genetic diversity presented in the 2019-2020 rye (Secale cereale L. inbred line 'Lo7') genome assembly release by the International Rye Genome Consortium (IRGSC). Lo7 - WGS assemblies

The phylogenetic analysis of Secale genetic diversity presented in the rye genome assembly release by the International Rye Genome Consotrium (IRGSC) is an expansion of the analysis published in Schreiber et al. (2019; doi: 10.1111/eva.12624). These data include five whole genome shotgun (WGS) sequence data sets that were added to the original dataset (Illumina NovaSeq Paired End 150 bp sequences, S2 flowcell, produced by Novogene), and the variant calls produced for the combined dataset (following filtering and imputation). The lines “Lo7” and “Lo225” refer to commercial inbred lines provided by KWS Lochow GMBH, and sample names with an “R###” identifier are from the IPK genebank’s collection. Full methods and materials descriptions are available in the publication associated with the IRGSC genome release.