Supplemental Material for Hawley <i>et al</i>., 2025
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DeepVariant vcf files containing mutations against the <em>D. mauritiana</em> reference genome generated using the below methods: <br> After sequencing, raw fastq files were adapter trimmed using Trim Galore (v0.6.10) and aligned to the <em>D. mauritiana</em> reference genome <em>(D_mauritiana</em>_ASM438214v1; RefSeq) using bwa mem (v0.7.17). Aligned reads were then deduplicated by processing them through samtools (v1.18) fixmate, sort, and markdup with the -r argument. Variant calling was run on these deduplicated reads using deepvariant (v1.5.0) with the Whole Genome Sequence (WGS) model type argument
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GSA Journals创建时间：
2025-03-03
