A comparative genomic analysis at the chromosomal-level reveals evolutionary patterns of aphid chromosomes

De novo assembly and annotation of the Semiaphis heraclei genome, and reannotation of eight previously published chromosome-level assemblies of aphid genomes.The SHE.genomic.fasta file is the de novo assembled genome of Semiaphis heraclei, and SHE.evm.gff3 is its protein-coding gene annotation file.The AGO.genomic.rename.fasta file is the renamed chromosome sequence of the Aphis gossypii genome, and AGO.evm.gff3 is its reannotated protein-coding gene annotation file.The API.genomic.rename.fasta file is the renamed chromosome sequence of the Acyrthosiphon pisum genome, and API.evm.gff3 is its reannotated protein-coding gene annotation file.The ELA.genomic.rename.fasta file is the renamed chromosome sequence of the Eriosoma lanigerum genome, and ELA.evm.gff3 is its reannotated protein-coding gene annotation file.The MPE.genomic.rename.fasta file is the renamed chromosome sequence of the Myzus persicae genome, and MPE.evm.gff3 is its reannotated protein-coding gene annotation file.The NFO.genomic.rename.fasta file is the renamed chromosome sequence of the Neotoxoptera formosana genome, and NFO.evm.gff3 is its reannotated protein-coding gene annotation file.The RMA.genomic.rename.fasta file is the renamed chromosome sequence of the Rhopalosiphum maidis genome, and RMA.evm.gff3 is its reannotated protein-coding gene annotation file.The SCH.genomic.rename.fasta file is the renamed chromosome sequence of the Schlechtendalia chinensis genome, and SCH.evm.gff3 is its reannotated protein-coding gene annotation file.The SMI.genomic.rename.fasta file is the renamed chromosome sequence of the Sitobion miscanthi genome, and SMI.evm.gff3 is its reannotated protein-coding gene annotation file.Sourcedata: The source data behind the graphs in the paper.