Acinetobacter baumannii AMR & mobility pilot cohort per-genome outputs (500 genomes)

Full per-genome analysis outputs for the structured 500-genome pilot cohort (stages S1/S2/S3) of a 12-step AMR/mobility pipeline: AMRFinderPlus 4.2.7, RGI 6.0.8/CARD 4.0.1, StarAMR 0.12.1, Bakta 1.12.0, CheckM2 1.1.0, GUNC 1.0.6, MLST 2.35.0 (Pasteur), ISEScan 1.7.3, IntegronFinder 2.0.6, MOB-suite 3.1.9, QUAST 5.3.0. genome_outputs/ holds per-genome directories (source tree encoded in the dirname: stage3_raw__*, stage2_batch2_raw__*, stage1_snapshot__*) with the assembly (.fna), AMR calls, mobility outputs, QC reports, Bakta annotation, and _SUCCESS.json checksums. manifests/ holds the pilot rosters and provenance; interpretation/ holds the frozen unified 500-genome matrix, prevalence/concordance/mobility tables, and figures 1-3; report_pilot_final_pass.md is the frozen pilot report (18/18 gate criteria). 16 designated pilot genomes have no raw data (no-raw-data canaries, NOT_OBSERVED in the unified matrix) as documented in the frozen report.