Data for "MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0"

This data set contains reanalyzed data from the "MS2 500 ms" and "MS2 750 ms" workflow originally published by Furtwängler et al. 2022. The full data set is available on ProteomeXchange via the PRIDE partner repository using ID PXD029320. This data set contains, for both workflows mzML files Output files from analysis with MS Amanda + settings file Output files from analysis with MS Amanda in combination with Percolator + settings file Percolator pin files Output files from analysis with MS²Rescore