R [56] (https://www.r-project.org/) code used to analyze the household outbreak simulations in section.

Produces Figs 1–4. Requires the following packages: gee [66] (https://cran.r-project.org/package=gee)reticulate [67] (https://rstudio.github.io/reticulate/)survival [68] (https://cran.r-project.org/package=survival)transtat [69] (https://github.com/ekenah/transtat) Directions and package versions used for publication are in comments. gee [66] (https://cran.r-project.org/package=gee) reticulate [67] (https://rstudio.github.io/reticulate/) survival [68] (https://cran.r-project.org/package=survival) transtat [69] (https://github.com/ekenah/transtat) (R)