Additional file 6 of Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids

Additional file 6: Table S1. Individual trait scores and Person correlation between traits. Table S2. Traits significantly different (T-test) between the sequenced samples. Table S3. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between groups of hybrids. Table S4. Normalised counts, expression fold-change and P-values for all the genes in roots, stem and leaf tissue between hybrids and parents. Table S5. Functional annotation, GO and enzyme codes for all the genes in the reference genome. Table S6. Enriched GO terms among DEG between groups of hybrids. Table S7. Enriched GO terms among DEG between hybrids and parents. Table S8. Detailed functional annotation of 88 DEG within the enriched “carbohydrate metabolism” GO term. Table S9. Detailed functional annotation of 29 DEG within the enriched “generation of precursor metabolites and energy” GO term. Table S10. Detailed functional annotation of 72 DEG within the enriched “response to stress” GO term. Table S11. Detailed functional annotation of 31 DEG within the enriched “secondary metabolism” GO term. Table S12. Transcription factor and target genes contained in each regulon in the TRN. Table S13. Enrichment analysis of differential expression genes for each regulon in the TRN. Table S14. Enrichment analysis of GO terms in each regulon for the TRN. Table S15. Annotation of the twenty-eight regulons were enriched with the “carbohydrate metabolism”, “generation of precursor metabolites and energy”, or “secondary metabolism” GO terms; and were also enriched in DEGs, or where the TF was DE. Table S16. Annotation of the target genes in the twenty-eight highlighted regulons.