Doctoral thesis-Mengqi Wang-Chapter 4

Table S1: General whole genome DNA methylation sequence statistics per sample; Table S2: Comparisons of methylation levels of cytosine sites in the context of CpG, CHG and CHH at different genic structures and genomic regions between SCP and HC groups; Table S3: List of differentially methylated cytosine sites in the context of CpG; Table S4: List of differentially methylated cytosine sites in the context of CHG and CHH; Table S5: The distribution of differentially methylated cytosine sites among chromosomes and genic structures; Table S6: List of differentially methylated regions identified based on CpG sites; Table S7: The distribution of DMCs in genes and the functional enrichment for genes that harbored DMCs; Table S8: List of differentially methylated methylation haplotype blocks; Table S9: Functional enrichment for genes harboring dMHBs in their promoters, first exons and/or first introns; Table S10: List of identified differentially methylated and expressed genes (DMEGs); Table S11: Functional enrichment for DMEGs; Table S12: Candidate discriminate signatures of SC mastitis selected by sPLS-DA and DIABLO; Table S13: Sample information and results of target bisulfite amplicon sequencing for two dMHBs discriminate signatures in a larger sample size; Table S14: Information on cows used