Number of sequences, confirmed cases and outbreaks in the UK regions.

Total confirmed cases by qPCR during the 2018/2019 epizootic and number of outbreaks (affected premises) per region. The number of sequences in the down sampled dataset used in the validation analyses are provided in the columns “Balanced proportion of sequenced cases” (number of sequences down sampled to a proportion of 0.25, corresponding to the lowest sequencing coverage, found in the region of London) and “Balanced proportion of sequenced outbreaks” (number of sequenced outbreaks down sampled to a proportion of 0.353, corresponding to the lowest proportion of sequenced outbreaks, found in the South West England region). (XLSX)