Processed source data and analysis code for cross-layer benchmarking of SGTA in lung adenocarcinoma

This versioned research compendium contains analysis scripts, processed statistical outputs, figure-level source data, figure previews, provenance records, and audit files supporting a cross-layer benchmark of SGTA in lung adenocarcinoma. Version 1.3.1 is a presentation-only patch that reorganises the unchanged frozen evidence into eight main figures and five supplementary figures, standardises uppercase panel letters, replaces Figure 1 with a resource-by-analysis contribution matrix, and moves the former cellular-claim gate panel from main Figure 7 to Supplementary Figure S5. It includes the active figure builders and plot-ready tables for the revised layout. No data, eligibility rule, statistical model, estimate, multiplicity decision, or interpretation changed from version 1.3.0. No new primary patient or experimental data were generated. Raw TCGA, GEO, CPTAC/PDC, MSigDB, and DepMap matrices are not redistributed. Original code is licensed under MIT; study-generated processed outputs, figures, provenance, and documentation are licensed under CC BY 4.0.Administrative correction (28 July 2026): Outdated authorship metadata in legacy manuscript-building materials were corrected. This administrative correction does not affect the data, analyses, figures, results, or scientific conclusions.