Software and database resource mentions across the whole of PubMed Central full-text articles

This is a compressed .sql.gz file of a MySQL database dump. The table contains the automatically extracted mentions of database and software resource names as extracted by bioNerDS across the full sub-set of open-access full-text PubMed Central articles. Each matched resource is identified by name, text offsets and "normalised" name, and also includes details of the rules from which the name was matched. This dataset is one of the primary research contributions of my PhD work, and a paper currently being finalised for submission to PLoS Computational Biology.