Maeda2019_AmmoniumTransportAssimilation

The E. coli ammonium transport and assimilation network. This SBML model simulates Kim's experiment with glucose as a carbon source and external NH4+ = 4 microM for wild type (the refined active transporter model). SBML does not support some of the functions required for the complete simulations shown in the original article. For the complete simulations, please refer to the MATLAB program provided as a part of the original article: Maeda K, Westerhoff HV, Kurata H, Boogerd FC: Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network. npj Systems Biology and Applications 2019, 5(1):14, https://doi.org/10.1038/s41540-019-0091-6.