Additional file 2 of Differentiated adaptative genetic architecture and language-related demographical history in South China inferred from 619 genomes from 56 populations

Additional file 2: Table S1. Symmetric f4-statistic testing. Table S2. Pairwise qpWave results indicated the genetic heterozygosity between GPH and East Asians. Table S3. Identification of modern Northern ancestral sources in the form of f4(reference populations, GPH; Northern ancestral sources, Mbuti). Table S4. Modern ancestral uniqueness of GPH determined by f4-statistic in the form f4(Northern ancestral sources, GPH; reference populations, Mbuti). Table S5. Pairwise qpWave results confirmed the genetic heterozygosity between GPH and ancestral sources in the distal qpAdm model. Table S6. Comparing genetic homogeneity between GPH and ancestral surrogate populations used in proximal qpAdm model using qpWave. Table S7. The three-population mixing model of GPH inferred by qpAdm. Table S8. Admixture times inferred from ALDER for GPH. Table S9. The population-specific adaptive signals using PBS in the form of (GPH/Miao/Yao/Zhuang/Sui/Jing_Guangxi-Han_Changchun-European). Table S10. The result of XPEHH of GXZ. Table S11. Frequency distribution of the three loci of FADS in ancient East Asians. Table S12. The regional-specific adaptive signals in the form of (GPH-Jing/Miao/Sui/Yao/Zhuang_Guangxi-Han_Changchun) using PBS.