Supplementary Tables and Data

All Supplementary Tables are provided in one Excel sheet. If you are loading these tables into R or python, you must remove the top rows, which contain a title, and sometimes a description of the fields.<br><b>Table ST1: </b>Descriptive statistics of taxa. Various descriptive statistics for subgenera of the genus <i>Lactobacillus</i> and genera detected in this study: number of ASVs within the (sub)genus (n_asvs), prevalence (occurrence), average relative abundance (mean_rel_abundance), frequency of being the most abundant taxon and greater than 0% abundant (top_and_gt0p), same as previous but greater than 30% abundant (top_and_gt30p), same as previous but greater than 50% abundant (top_and_gt50p), the previous three measures but in terms of relative frequencies (top_and_gtXp_rel).<br><b>Table ST2: </b>Table of the number of Isala participants per VALENCIA subCST.<br><b>Table ST3:</b> Taxa-taxa correlation network generated from sparcc for the Isala dataset. Each cell indicates the compositionality aware correlation between two taxa.<br><b>Table ST4: </b>Association tests between participant characteristics and their vaginal microbiome. Results of statistical tests for each tested questionnaire response. Results of association tests are provided for beta-diversity (Adonis tests), alpha-diversity, CSTs, eigentaxa and individual taxa. In addition to effect sizes, test statistics and p-values, the number of participants in each condition is provided.<br><b>Table ST5:</b> Supplementary meta-data for the Isala samples used in this study. Each ENA sample ID is linked to a participant’s age, whether intercourse occurred in the last 24 hours, technical covariates, and CST annotations. This file can be used in combination with the code available on github.<br><b>Table ST6:</b> Results of the PERMANOVA (Adonis2) tests between technical factors and the vaginal microbiome.<br><b>Table ST7:</b> Count data per (sub)genus per sample. Linked by identified to the meta data provided on EGA and Table ST5. This file can be used in combination with the code available on github.<br><b>Table ST8:</b> Relative abundance data per sample. Linked by identified to the meta data provided on EGA and Table ST5.<br><b>Table ST9: </b>Taxa classification specification per (sub)genus specified in Tables ST7 and ST8. This file can be used in combination with the code available on github.<br><b>Table ST10:</b> Count data per ASV per sample. Linked by identified to the meta data provided on EGA and Table ST3. This file can be used in combination with the code available on github.<br><b>Table ST11: </b>Taxa classification specification per ASV specified in Table ST10. This file can be used in combination with the code available on github.