Implementation of Genomic Variant Calling Using GATK4, SPARK, WDL, CROMWELL and DOCKER Over Simulated Ebola NGS Dataset.
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Ebola genome is manually mutated to contain structural variants. There are seven mutated ebola genomes each one for large deletion, insertion, duplication, translocation, inversion, complex variant1 (consecutive three mutations - insertion, duplication and deletion) and complex variants2 (consecutive three mutations - deletion, duplication and deletion). All insertions are novel sequence insertion. Paired-end illumine RNASEQ reads are simulated in fastq format.
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Zenodo创建时间：
2020-05-23
