Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla

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This is a supplemental file (PeerJ_TableS1.docx) of the manuscript: Kollars, N. M., S. a. Krueger-Hadfield, J. E. Byers, T. W. Greig, A. E. Strand, F. Weinberger, and E. E. Sotka. 2015. Development and characterization of microsatellite loci for the haploid–diploid red seaweed Gracilaria vermiculophylla. PeerJ 3:e1159. doi: <a href=\"https://dx.doi.org/10.7717/peerj.1159\" target=\"_blank\">10.7717/peerj.1159</a> Related supplemental files: <a href=\"http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS2.pdf\" target=\"_blank\">Table S2</a>: Null allele frequencies for the microsatellite loci developed for Gracilaria vermiculophylla. Frequencies were directly estimated in the haploid subpopulations, whereas frequencies in each of the diploid subpopulations at Akkeshi, Elkhorn Slough, Fort Johnson and Nordstrand were calculated using maximum likelihood and the software MLNullFreq. <a href=\"http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS3.pdf\" target=\"_blank\">Table S3</a>: Short allele dominance analysis for microsatellite loci developed for Gracilaria vermiculophylla including number of pooled size classes used in regression analysis (following Wattier et al. 1998), No. of classes, and linear regression statistics. Loci Gverm_10367 and Gverm_2790 only exhibited two alleles in our sampled populations and consequently, short allele dominance analysis was not applicable (NA).  <a href=\"http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS4.pdf\" target=\"_blank\">Table S4</a>: Linkage disequilibrium analysis for microsatellite loci developed for Gracilaria vermiculophylla. Darkened cells indicate pairs of loci that show significant linkage disequilibrium after Bonferroni correction (p-value threshold < 0.006 at α = 0.05). <a href=\"http://dmoserv3.whoi.edu/data_docs/Gracilaria_effects/PeerJ_TableS5.pdf\" target=\"_blank\">Table S5</a>: Genetic features per locus of four populations of Gracilaria vermiculophylla, including: number of alleles at each locus, NA, + standard error (SE); mean allelic richness, AE, based on the smallest global sample size of 46 alleles (23 diploid individuals) + SE; mean observed heterozygosity, HO, + SE; mean expected heterozygosity, HE, + SE.  <a href=\"http://www.bco-dmo.org/dataset/629302\" target=\"_blank\">Red Invasive Seaweed - Raw Genotypes</a> (PeerJ_genotype_data.xlsx)

创建时间：

2021-12-05