Assessing varietal homogeneity in pooled samples of cross-pollinated crops using genetic markers

Allele frequencies : allele_frequencies_sampleswithless10000NA_SNPwithless100NA Raw data sequences : Four diploid varieties of perennial ryegrass : Aberavon (ABER), Clerpin (CLERP), Mara (MARA) and Medea (MEDEA), have been genotyped by sequence-capture both indivdually (1-64 ) with two replicates (1-2) and in pools (B for bulk) with 5 replicates (1-5) in paired-end (1 forward and 2 reverse). For example: - ABER001_1.1 : individual 1 of Aberavon replicate 1 sequence forward - ABER_B_3.2 : pool of Aberavon replicate 3 sequence reverse