Ortholog data from the tuatara genome project

This record contains orthology predictions based on the Maker gene annotation<br> of the tuatara (Sphenodon punctatus) and a set of 25 other species, using the<br> Ensembl methodology. See http://doi.org/10.5281/zenodo.1489354 for the Maker annotation in GFF<br> format. The files all_trees.emf.gz and all_homologies.tsv.gz contain the phylogenetic<br> trees (all_trees.emf.gz, in the EMF alignment format) and the derived pairwise<br> orthologies and paralogies (all_homologies.tsv.gz, in tabular format). From the phylogenetic trees, sets of 1-to-1 orthologues across all 26 species<br> were extracted (pure_one2one_orthologies.txt). Sets of orthologues that span<br> all the species but include paralogues were reduced to 1 copy per species<br> using gene order conservation and sequence similarity. This extra dataset is<br> available in promoted_one2one_orthologies.txt The main Ensembl entry point for tuatara is:<br> http://www.ensembl.org/Sphenodon_punctatus/ This work is supported by Ngatiwai iwi, Allan Wilson Centre, University of<br> Otago, New Zealand Genomics Limited, Illumina, National eScience<br> Infrastructure (NeSI NZ).