Metagenomic assembled genomes from M. arvalis, B. taurus and O. aries derived from grassland

To generate metagenome-assembled genomes (MAGs) from feces, Megahit vers. 1.1.1 was used for the de novo assembly of metagenomic reads. To generate bins, we utilized Metabat vers. 2:2.15 with the minimum size of a contig for binning =1500. Bins were dereplicated with dRep vers. 3.4.0. CheckM vers. 1.2.1 was used for quality control of the MAGS obtained using the parameters “more than 80% completeness” and “less than 5% contamination”. Raw reads and further metadata can be found under the accession number PRJEB86517 (EMBL EBI ENA).Publication is currently under review. Link to publication will be shared here