Dataset and R Code accompanying "Camera trapping and passive acoustic monitoring as non-invasive techniques for the study of small mammals"

These data and R code accompany the manuscript "Camera trapping and passive acoustic monitoring as non-invasive techniques for the study of small mammals" by Stiff, Wakefield and Rands. Three .R code files are given, which analyse the described datafiles (given as .csv comma-delimited files): CT tunnel comparisons.R, which uses two data files: FINAL DATA.csv Specific deployment: Identifier for the specific tunnel deployment (site (LW,BD,AT,FF), deployment number and tunnel design) Common name: species common name Family: species family grouping Deployment: Identifier for the triplet deployment (site and deployment number) Site: Identifier for the site the tunnel was deployed at, these being Lower Woods (LW), Avon Needs Trees (AT), Black Mountains (BD), and Fenswood Farm (FF) Tunnel Design: tunnel design used in the deployment, options being modified Littlewood tunnel (L), Mostela tunnel (M) and plastic tunnel (P) Count: Count of individual small mammals. Off_frame_pivot.csv Site.Specific: Identifier for the specific tunnel deployment (site (LW,BD,AT,FF), deployment number and tunnel design) Deployment: Identifier for the triplet deployment (site and deployment number) Site: Identifier for the site the tunnel was deployed at, these being Lower Woods (LW), Avon Needs Trees (AT), Black Mountains (BD), and Fenswood Farm (FF) Tunnel Design: tunnel design used in the deployment, options being modified Littlewood tunnel (L), Mostela tunnel (M) and plastic tunnel (P) Count: Count of videos classed as containing ‘off-frame individuals’ Latency to detection.R, which uses two data files: Latency to detection species.csv Deployment: Identifier for the triplet deployment (site and deployment number) Tunnel Design: tunnel design used in the deployment, options being modified Littlewood tunnel (L), Mostela tunnel (M) and plastic tunnel (P) Family: species family grouping Latency: time from deployment start until first detection of the species/family, in hours Latency to detection family.csv Deployment: Identifier for the triplet deployment (site and deployment number) Tunnel Design: tunnel design used in the deployment, options being modified Littlewood tunnel (L), Mostela tunnel (M) and plastic tunnel (P) Family: species family grouping Latency: time from deployment start until first detection of the species/family, in hours McNemar tests.R, which uses four data files: AV detection contingency.csv: contingency table showing presence (Y) and absence (N) of all species groups detected by PAM and camera trapping, each tunnel deployment. This includes a separate yes/no for each species group, and both the Mostela tunnel and the plastic tunnel. AV behaviour contingency overall.csv: contingency table showing positive (Y) and negative (N) detections by PAM, and whether or not multiple individuals had been detected within one video, in any videos during that deployment (Y/N) AV behaviour contingency positive PAM.csv: contingency table showing positive (Y) and negative (N) detections by PAM, and whether or not multiple individuals had been detected within one corresponding time-matched video during that deployment (Y/N). This only included data on positive PAM detections. Vole contingency.csv: contingency table showing presence (Y) and absence (N) of voles by camera trapping and PAM across tunnel deployments (including the Mostela tunnel and plastic tunnel)