Additional file 8 of Integrative omics analyses of the ligninolytic Rhodosporidium fluviale LM-2 disclose catabolic pathways for biobased chemical production

Additional file 8: Table S2. Description and gene expression profile of the R. fluviale LM-2 genome (Excel table). S2.1) List of R. fluviale LM-2 genes (IDs) with functional prediction protein, protein length, EC number and GO terms based on Blast2Go (69) analysis. The presence or absence of signal peptides was identified using SignalP (73). The Cazy domain was identified using dbCAN (74). For the Log2Fold change values, p ≤ 0.05 was considered statistically significant. Log2 fold change ≥ 1 was considered indicative of upregulation and Log2 fold change ≤ 1 was considered indicative of downregulation. S2.2) Number of genes with a GO separated by GO term categories: biological process, cellular component, and molecular function. S2.3) Pfam domain for each gene with the name of the enzyme for aromatic degradation and the aromatic pathway to which it is related. S2.4) Expression profiles of ligninolytic and aromatic compound degradation genes in the R. fluviale LM-2 transcriptome.