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Simulated metagenomic datasets used for determining the threshold score cutoff for taxa prediction using StrainIQ software

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Zenodo2023-07-11 更新2026-05-26 收录
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StrainIQ (Strain Identification and Quantification) is a novel tool that implements a new <em>n</em>-gram based algorithm for predicting and quantifying strain-level taxa from whole genome metagenomic sequencing data. To avoid the false positive prediction of by StrainIQ algorithm, we determined cutoff score for each site specific n-gram model called DSEM (DNA Signature Element Model) using positive and negative metagenomic datasets. The Figure2-datasets.zip has positive (from GI tract genomes) and negative (from non-GI tract genomes) simulated metagenomic datasets that were used for determining optimal cut-off based on GI tract DSEM. Please find the new link for this data at https://zenodo.org/record/8132164

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Zenodo
创建时间:
2023-03-31
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