BRAKER3 annotated genomes for 50 smut fungi with orthogroups

See the forthcoming publication presently titled "A chromosome-level genome assembly of Thecaphora frezzii, cause of peanut smut, reveals a repetitive genome and the largest of the true smut fungi". As part of a comparative genomics analysis comparing T. frezzii with Mycosarcoma maydis (prev. Ustilago maydis) and 48 other true smut fungi for which genomes are available, all genomes were annotated by the same pathway, employing EDTA and BRAKER3 with protein data from the Basidiomycota_odb12 dataset and with Augustus trained on M. maydis. The longest isoforms were retained with AGAT. While for some species, an annotation was available in NCBI at the time of writing, for many others, none was available. All were annotated by the same pipeline for consistency. This dataset consists of: 1, a sample table with genome references for annotations; 2 annotations for 50 smut fungi; and 3: results from an orthofinder run showing orthology between predicted proteins. In the orthofinder results, annotations from the published T. frezzii genome from our paper is used in place of the BRAKER3 annotated genome. In addition, we used the REFSeq annotation for M. maydis, and an unpublished annotation for T. thlaspeos acquired by personal communication with Vera Gohre in place of hte BRAKER3 annotations for the species. NOTE: the T. frezzii annotation included here is not the annotation in NCBI, which was achieved through FunAnnotate. This one was used in the paper to compare some genomic features (e.g number of genes, introns, etc.). It is included for reproducibility, but for all other purposes, please prefer the published annotation referenced in the paper. Please reach out to [e-mail] with questions.