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Additional file 2 of RNA modification mapping with JACUSA2

Figshare2022-05-16 更新2026-04-28 收录

RNA修饰检测

m6A靶位点预测

数据链接：

https://figshare.com/articles/dataset/Additional_file_2_of_RNA_modification_mapping_with_JACUSA2/19778074 数据链接链接失效反馈

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资源简介：

Additional file 2 Table S1 (XLSX). m6A target site predictions from MazF-FTO differential digestion assay.

应用场景：

创建时间：

2022-05-16

RNA修饰检测

纳米孔测序数据

The covalent modification of RNA molecules is a pervasive feature of all classes of RNAs and has fundamental roles in the regulation of several cellular processes. Mapping the location of RNA modifica

NIAID Data Ecosystem60

Detection of SINEUP RNA modification by Oxford Nanopore direct-RNA sequencing

RNA修饰检测

Nanopore测序

To detect the modifed bases in SINEUP RNA, we compared chemically modified in vitro transcribed (IVT) SINEUP-GFP RNA and in-cell transcribed (ICT) SINEUP RNA from SINEUP-GFP and sense EGFP co-transfec

NIAID Data Ecosystem20

Detection of ? in RNA oligonucleotides and in tRNAs from S. cerevisiae strains by reverse transcription using RT-KTq I614Y

RNA修饰检测

tRNA修饰

We have engineered an RT-active DNA polymerase variant called RT-KTq I614Y that produces error RT-signatures specific for pseudouridine (?) without prior chemical treatment of the RNA samples. These s

NIAID Data Ecosystem00

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

RNA修饰检测

纳米孔测序

Ribosomal RNAs are decorated by numerous post-transcriptional modifications whose exact roles in ribosome biogenesis, function, and human pathophysiology remain largely unknown. Here, we report a targ

DataCite Commons2025-02-14 更新30

Best Practices for the Analysis of Oxford Nanopore Direct RNA Sequencing Data, m5C

RNA修饰检测

纳米孔测序

We analyze the different steps in RNA modification detection pipeline using nanopore sequencing data, and we provide guidelines for determining the best tool for each of these steps.

NIAID Data Ecosystem00

Additional file 2 of RNA modification mapping with JACUSA2

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