Analysis of the diversity around synonymous substitutions; response: number of fourfold degenerate polymorphisms around synonymous substitutions.

A generalized linear mixed model with Poisson distribution used to compare the diversity around synonymous substitutions along the D. pseudoobscura+D. persimilis lineage in relation to recombination rates measured in the Flagstaff cross. All parameters and transformations were identical to those in Table 5. Table S12 gives the mean and standard deviation for each factor in the model.