Pantherophis alleghaniensis/obsoletus genome data from Burbrink et al. 2023

Data from Burbrink et al. 2023: Considering admixture when producing draft genomes: an example in North American ratsnakes (P. alleghaniensis/P. obsoletus). G3.

1) GTF stats file for the whole genome AMNH R-178746:

Pantherophis_alleghaniensis_obsoletus_.gtf.stats.txt

2) GTF file for the whole genome AMNH R-178746:

Pantherophis_alleghaniensis_obsoletus.gtf

3) Scaffolds from 10X and truseq for P. alleghaniensis/P.obsoletus scaffolded (AMNH R-178746) to Thamnophis elegans: 

P_alleghaniensis_concatenate_ragtag.scaffolds.fasta

4)GFF file for repeat elements from AMNH R-178746:

ratsnake_all_repeats.gff.gz

5) 20 UCE Diagnostic loci (fasta) for the P. alleghaniensis/P. obsoletus for the AMNH R-178746 whole genome sample and samples from Burbrink et al. (2021):

Diagnostic_Loci.zip

6) Whole genome for AMNH R-178746 uploaded to NCBI after their recommended processing:

Pantherophis-obs-nodup-no_small_vector_gone.fa

7) Whole genome for AMNH R-178746 prior to NCBI upload:

Pantherophis-obs.fa

8) Transcriptome assemblies from AMNH R-178746 for 13 organs and combined organs:

ratsnake_transcriptome_assemblies.zip