Comparisons between FMotif and other pattern-driven algorithms on (, ) samples with , , and noise sequences.

‘WEEDER()’ indicates the execution time of WEEDER given the occurrence frequency threshold . ‘’ indicates a run time of over 10 hours. , , and are the units of a run time and denote seconds, minutes, and hours respectively. The number after each run time is the ranking number of a true planted motif among the top 25 predicted motifs. ‘’ after a run time indicates that the real motifs were not in the top 25.