Code and data outputs for: Demographic bias in harbour porpoise strandings

This deposit contains two companion archives that must be used together to reproduce analyses and manuscript outputs. 1) porpoise-strandings-code-v1.0.0.zipContains analysis and manuscript source code, including:- code/run-all.R, code/setup.R, code/analysis/*.R- manuscript/porpoise-strandings-manuscript.Rmd- manuscript/porpoise-strandings-supplementary.Rmd- manuscript/render_manuscript.R- manuscript/styles/reference.docx- manuscript/zenodo/sessionInfo.txt 2) porpoise-strandings-data-outputs-v1.0.0.zipContains input data and manuscript outputs, including:- data/raw/ (e.g., IJsseldijk_et_al_2020_strandings.csv and additional bycatch/hunting source files)- data/metadata/strandings.md- outputs/figures/- outputs/supplementary_material/figures/- outputs/supplementary_material/tables/ Reproduction steps:1. Unzip both archives into the same parent folder.2. Copy data/raw from the data archive into the code archive folder (<code_bundle>/data/raw).3. From the code bundle root, run: - Rscript code/run-all.R - Rscript manuscript/render_manuscript.R false false