Wozniak_2022

The "Wozniak_2022_VOC_Data.zip" dataset contains chromatographs of volatile organic compounds (VOC) emitted by different Capsella genotypes. VOCs were analyzed by the headspace solid phase microextraction (HS-SPME) and gas chromatography coupled with electron impact ionization/quadrupole mass spectrometry (GC-EI-MS). It also includes Supplemental Data1, which shows the average responses per individual of all mass features observed after non-targeted profiling of the volatile organic compounds. In this table, blank values for each mass fragment were substracted and the response was stadardized to the number of open flowers. In the PiNPiS_scripts folder are scripts for computing PiNPiS for every gene in the genome from standard sequencing files ( Available also on github https://github.com/kevinfrsartori/Whole_Genome_PiNPiS) Required data: -for the genetic reference: the CDS ".cds.fa", the gff ".gene.gff3", the protein "protein.fa". -for the variants: a VCF file ".vcf". Procedure: Follow the 0-Steps_PiNPiS text file.