Bioinformatics WWS Training Dataset

This focuses on the practical application of our bioinformatics pipeline using the dataset sourced from BioProject PRJNA957477. This is the specific training data Tasneem has been assigned; she is required to interpret these results to address the surveillance challenges outlined by her supervisor. By working through this data, you will mirror the analytical steps necessary for high-level pathogen surveillance and reporting. Downloading the Training Dataset The dataset is is inclusive of the metadata. To ensure everyone is working with the exact same files, please use the wget command to download the archive directly to your server or local environment. 1. Download the archive Use the following command to download the file and name it appropriately: wget -O training_dataset.tar.gz [Insert_Zenodo_Link_Here] 2. Extract the data We will use tar to extract the files. Note that the -z flag in tar automatically handles the decompression (gunzip), so you do not need to run a separate command to unzip the file first. tar -xzvf training_dataset.tar.gz