Prediction accuracies of NetNES, Wregex, NESsential, NESmapper, and consensus-based NES predictions using artificial NES test data.
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Prediction accuracies of the indicated methods and tools were determined with the artificial NES sets, as in Table 1.aTraditional NES consensus sequence, Φ–X2,3–Φ–X2,3–Φ–X–Φ.bClass 1a, 1b, 1c, 1d, 2, and 3 NES consensus sequences, not allowing A, C, T, or W at positions Φ3 and Φ4 (see Introduction for detail).cPrediction with recommended PSSM configuration.dPrediction with relaxed PSSM configuration.eNESs with the probability values of ≥0.1 selected.fNESs with the probability values of ≥0.5 selected.gPrediction with unoptimized NES profiles, NESs with a score of ≥2 were selected.hPrediction with optimized NES profiles. NESs with a score of ≥2 were selected.Prediction accuracies of NetNES, Wregex, NESsential, NESmapper, and consensus-based NES predictions using artificial NES test data.
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2015-12-02
