Supplementary files of "Genome-wide comparison of DNA methylation patterns between yak and three cattle strains and their potential association with mRNA transcription"

Figure and table captions: Figure S1. Relationship between methylation level and gene density (a) or repeat density (b). Figure S2. PCA analysis on CpG island, promoter and repeat density. Figure S3. Ratio of observed CpG to evaluated CpG across the genomes. Figure S4. Venn diagram of differentially methylated genes. Figure S5. Ratios of negatively to positively correlated gene pairs. Table S1. Data production of samples. Table S2. Average methylation level of each sample. Table S3. Gene expression in each sample and Differentially expressed gene in each comparison group. Table S4. Number of B-SMRs and T-SMRs. Table S5. Details of T-SMRs in each species/breed. Table S6. Details of B-SMRs in each tissue. Table S7. Enriched KEGG terms of T-SMRs and B-SMRs.