EasyFuse detected fusion gene candidates

This dataset contains supplementary data tables with predicted gene fusion candidates from the EasyFuse publication Weber et al. 2022File 1: Fusion genes detected in MCF7 and SKBR3 cell lines.Presented are fusion genes detected in MCF7 and SKBR3 sequencing samples: Each breakpoint pair combined with the overlapping gene names and reading strands in reading direction represents a prediction as indicated in column “FGID”, as well separately in the columns “BPID, “Fusion_Gene”, “Breakpoint1” and “Breakpoint2”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads”. The “Sample” column indicates the cell line and the column “Tool” the reporting tool. The column “Prediction_File” contains information on the sequencing replicate used for prediction.File 2: Fusion genes detected in FF tumor tissueFusion genes detected in 14 FF breast cancer samples. Each breakpoint pair combined with the overlapping gene names and reading strands in reading direction represents a prediction as indicated in column “FGID”, as well separately in the columns “BPID”, “Fusion_Gene”, “Breakpoint1” and “Breakpoint2”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads”. The “Sample” column indicates the cell line and the column “Tool” the reporting tool. The column “Prediction_File” contains information on the sequencing replicate used for prediction.File 3: Fusion genes detected in FF normal tissueFusion genes detected in 143 normal tissue samples derived from 49 different tissue sites. Each detected breakpoint pair combined with reading strands represents a prediction as indicated in column “BPID”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads” and the reporting tool in column “Tool”. The “Sample” column indicates the sample ID with the tissue site given in “Tissue”.File 4: EasyFuse predicted fusion genes in FF tumor tissueEasyFuse output of predicted candidate fusion genes in 57 breast cancer samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the methods.File 5: EasyFuse detected fusion genes in FFPE tumor tissueEasyFuse output of predicted candidate fusion genes in 14 FFPE tumor samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the methods.File 6: EasyFuse detected fusion genes in the immunogenicity cohortEasyFuse output of predicted candidate fusion genes in 14 FFPE tumor samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the Methods.